Office of the Rector and President

• External Relations Department
• Linkages and Alumni Office
• Marketing and Admissions Office
• Planning and Operations Department
• Quality Management Department

Academics and Research Division

• Basic Education
• Graduate School
• Library Services Department
• Registrar's Department
• Research Department
• School of Business, Management, and Accountancy
• School of Computer Studies and Technology
• School of Education, Arts, and Sciences
• School of Engineering and Architecture
• School of Nursing
• School of Tourism and Hospitality Management
• Senior High School Department

Administration Division

• Facilities Management and General Services Department
• Human Resource Department
• Information Technology Department

Finance Division

• Accounting Services Department
• Financial Services Department
• Treasury Department

Religious Education, Mission and Identity Division

• Campus Ministry Department
• Community and Extension Services Department
• Religious Education Department
• Student Services Department